GEOS-5 Documentation for Icarus 2.0: Difference between revisions

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__FORCETOC__

This page lists pages with information on setting up and running GEOS-5 Icarus 1.0. Earlier and later versions of GEOS-5 may differ in details that, while minor, will require different steps for building and running, so ''caveat utilitor''.

This page lists pages with information on setting up and running GEOS-5 Icarus 2.0. Earlier and later versions of GEOS-5 may differ in details that, while minor, will require different steps for building and running, so ''caveat utilitor''.

'''Back to [[GEOS-5 User's and Developer's Guides]]'''

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<pre>

==========================================================================

12Jun2017, Takacs, CVS Tag: Icarus-2_0 (non-zero diff to Icarus-1_0_p1)

Module: GEOSagcm

------------------------------------------------------------------------------

1) Updates from E.Nielsen to remove TR dependence on GMI.

2) GMI Updates to Stratospheric ICE fall speeds.

3) Introduce new terminology for Regular REPLAY (REPLAY_PREDICTOR, REPLAY_CORRECTOR, etc.)

4) Implement Anton's 2-Phase GOCART Tag: asd-Icarus-UNSTABLE-a3

5) Modified PHYSICS dry-mass dwdt calculation to reduce roundoff error

6) Implement Ensemble AMIP (EMIP) strategy within gcm_run.j

7) Modified MKIAU to allow creating Increments on BKG grid. Default is: GRIDINC = ANA

Restart Changes: YES

Additional IMPORT Restart: gocart_import_rst (Bootstrappable)

==========================================================================

10Apr2017, Takacs, CVS Tag: Icarus-1_0_p1 (non-zero diff to Icarus-1_0)

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</pre>

== Running Icarus 1.0 ==

== Running Icarus 2.0 ==

* [[Icarus 1.0 Quick Start]]: This page describes the minimum steps required to build and run GEOS-5 Icarus 1.0 on NCCS discover and NAS pleiades. You should successfully complete the steps in these instructions before doing anything more complicated.

* [[Icarus 2.0 Quick Start]]: This page describes the minimum steps required to build and run GEOS-5 Icarus 2.0 on NCCS discover and NAS pleiades. You should successfully complete the steps in these instructions before doing anything more complicated.

* [[Icarus 1.0 User's Guide]]

* [[Icarus 2.0 User's Guide]]

* [[Using the ExtData component]]

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* [[Icarus Single Column Model]]

== Icarus 1.0 Documentation ==

== Icarus 2.0 Documentation ==

* [[Media:GEOS5_doc.pdf|GEOS 5 Developer's Guide]] (pdf)

* List of Export/Import/Internal states, generated with <code>src/GMAO_Shared/MAPL_Base/mapl_vlist.py</code>

** [[Icarus 1.0 states sorted by short name | Sorted by short name]]

** [[Icarus 2.0 states sorted by short name | Sorted by short name]]

** [[Icarus 1.0 states sorted by component name | Sorted by component name]]

** [[Icarus 2.0 states sorted by component name | Sorted by component name]]

<!--

Created by:

$ ./GMAO_Shared/MAPL_Base/mapl_vlist.py --sort comp --format wiki /home/mathomp4/Models/Icarus-~~1_0_p1~~/GEOSagcm/src/GEOSgcs_GridComp/ > ~~i10p1_states_sort_by_comp~~.txt

$ ./GMAO_Shared/MAPL_Base/mapl_vlist.py --sort comp --format wiki /home/mathomp4/Models/Icarus-2_0/GEOSagcm/src/GEOSgcs_GridComp/ > /home/mathomp4/MindMapFiles/Icarus-2_0/i20_states_sort_by_comp.txt

$ ./GMAO_Shared/MAPL_Base/mapl_vlist.py --sort short --format wiki /home/mathomp4/Models/Icarus-~~1_0_p1~~/GEOSagcm/src/GEOSgcs_GridComp/ > ~~i10p1_states_sort_by_short~~.txt

$ ./GMAO_Shared/MAPL_Base/mapl_vlist.py --sort short --format wiki /home/mathomp4/Models/Icarus-2_0/GEOSagcm/src/GEOSgcs_GridComp/ > /home/mathomp4/MindMapFiles/Icarus-2_0/i20_states_sort_by_short.txt

-->

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* [[GEOS-5 Run-Time Characteristics]]

* Hierarchical structure: Below is a (partially folded) view of the Icarus 1.0 hierarchy where each node is a GridComp. Some of the nodes are folded (marked with a circle at the end) for clarity - clicking the composite node reveals the sub-nodes.

* Hierarchical structure: Below is a (partially folded) view of the Icarus 2.0 hierarchy where each node is a GridComp. Some of the nodes are folded (marked with a circle at the end) for clarity - clicking the composite node reveals the sub-nodes.

<!--

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GEOSgcs (or agcm or ogcm) and ran:

$ tree -d -I CVS -X | sed -f ~/MindMapFiles/mindmap.sedfile > ~/MindMapFiles/~~i10p1_tree~~.mm

$ tree -d -I CVS -X | sed -f ~/MindMapFiles/mindmap.sedfile > ~/MindMapFiles/Icarus-2_0/i20_tree.mm

You'll then need to manually go into the XML file and change the top

@@ Line 1: / Line 1: @@
 __FORCETOC__
-This page lists pages with information on setting up and running GEOS-5 Icarus 1.0.  Earlier and later versions of GEOS-5 may differ in details that, while minor, will require different steps for building and running, so ''caveat utilitor''.
+This page lists pages with information on setting up and running GEOS-5 Icarus 2.0.  Earlier and later versions of GEOS-5 may differ in details that, while minor, will require different steps for building and running, so ''caveat utilitor''.
 '''Back to [[GEOS-5 User's and Developer's Guides]]'''
@@ Line 9: / Line 9: @@
 <pre>
+==========================================================================
+Jun2017, Takacs,    CVS Tag: Icarus-2_0 (non-zero diff to Icarus-1_0_p1)
+                       Module: GEOSagcm
+------------------------------------------------------------------------------
+) Updates from E.Nielsen to remove TR dependence on GMI.
+) GMI Updates to Stratospheric ICE fall speeds.
+) Introduce new terminology for Regular REPLAY (REPLAY_PREDICTOR, REPLAY_CORRECTOR, etc.)
+) Implement Anton's 2-Phase GOCART Tag: asd-Icarus-UNSTABLE-a3
+) Modified PHYSICS dry-mass dwdt calculation to reduce roundoff error
+) Implement Ensemble AMIP (EMIP) strategy within gcm_run.j
+) Modified MKIAU to allow creating Increments on BKG grid.  Default is: GRIDINC = ANA
+Restart Changes: YES
+        Additional IMPORT Restart: gocart_import_rst (Bootstrappable)
 ==========================================================================
 Apr2017, Takacs,    CVS Tag: Icarus-1_0_p1 (non-zero diff to Icarus-1_0)
@@ Line 61: / Line 77: @@
 </pre>
-== Running Icarus 1.0 ==
+== Running Icarus 2.0 ==
-* [[Icarus 1.0 Quick Start]]: This page describes the minimum steps required to build and run GEOS-5 Icarus 1.0 on NCCS discover and NAS pleiades.  You should successfully complete the steps in these instructions before doing anything more complicated.
+* [[Icarus 2.0 Quick Start]]: This page describes the minimum steps required to build and run GEOS-5 Icarus 2.0 on NCCS discover and NAS pleiades.  You should successfully complete the steps in these instructions before doing anything more complicated.
-* [[Icarus 1.0 User's Guide]]
+* [[Icarus 2.0 User's Guide]]
 * [[Using the ExtData component]]
@@ Line 77: / Line 93: @@
 * [[Icarus Single Column Model]]
-== Icarus 1.0 Documentation ==
+== Icarus 2.0 Documentation ==
 * [[Media:GEOS5_doc.pdf|GEOS 5 Developer's Guide]] (pdf)
 * List of Export/Import/Internal states, generated with <code>src/GMAO_Shared/MAPL_Base/mapl_vlist.py</code>
-** [[Icarus 1.0 states sorted by short name | Sorted by short name]]
+** [[Icarus 2.0 states sorted by short name | Sorted by short name]]
-** [[Icarus 1.0 states sorted by component name | Sorted by component name]]
+** [[Icarus 2.0 states sorted by component name | Sorted by component name]]
 <!--
 Created by:
-  $ ./GMAO_Shared/MAPL_Base/mapl_vlist.py --sort comp --format wiki /home/mathomp4/Models/Icarus-1_0_p1/GEOSagcm/src/GEOSgcs_GridComp/ > i10p1_states_sort_by_comp.txt
+  $ ./GMAO_Shared/MAPL_Base/mapl_vlist.py --sort comp --format wiki /home/mathomp4/Models/Icarus-2_0/GEOSagcm/src/GEOSgcs_GridComp/ > /home/mathomp4/MindMapFiles/Icarus-2_0/i20_states_sort_by_comp.txt
-  $ ./GMAO_Shared/MAPL_Base/mapl_vlist.py --sort short --format wiki /home/mathomp4/Models/Icarus-1_0_p1/GEOSagcm/src/GEOSgcs_GridComp/ > i10p1_states_sort_by_short.txt
+  $ ./GMAO_Shared/MAPL_Base/mapl_vlist.py --sort short --format wiki /home/mathomp4/Models/Icarus-2_0/GEOSagcm/src/GEOSgcs_GridComp/ > /home/mathomp4/MindMapFiles/Icarus-2_0/i20_states_sort_by_short.txt
 -->
@@ Line 94: / Line 110: @@
 * [[GEOS-5 Run-Time Characteristics]]
-* Hierarchical structure: Below is a (partially folded) view of the Icarus 1.0 hierarchy where each node is a GridComp. Some of the nodes are folded (marked with a circle at the end) for clarity - clicking the composite node reveals the sub-nodes.
+* Hierarchical structure: Below is a (partially folded) view of the Icarus 2.0 hierarchy where each node is a GridComp. Some of the nodes are folded (marked with a circle at the end) for clarity - clicking the composite node reveals the sub-nodes.
 <!--
@@ Line 100: / Line 116: @@
 GEOSgcs (or agcm or ogcm) and ran:
-   $ tree -d -I CVS -X | sed -f ~/MindMapFiles/mindmap.sedfile > ~/MindMapFiles/i10p1_tree.mm
+   $ tree -d -I CVS -X | sed -f ~/MindMapFiles/mindmap.sedfile > ~/MindMapFiles/Icarus-2_0/i20_tree.mm
 You'll then need to manually go into the XML file and change the top