GEOS-5 Quick Start: Difference between revisions

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== Checking Out and Compiling GEOS-5 ==

The following assumes that you know your way around Unix, have successfully logged into your NCCS account (presumably on the '''discover''' cluster) and have an account on '''sourcemotel'''. Furthermore, to run jobs on the cluster you will need to set up passwordless <code>ssh</code> (which operates within the cluster). To do so, run the following from your '''discover''' home directory:

The following assumes that you know your way around Unix, have successfully logged into your NCCS account (presumably on the '''discover''' cluster) and have an account on '''sourcemotel'''.

~~cd .ssh~~

~~ssh-keygen -t dsa~~

~~cat d_dsa.pub authorized_keys >> tempFile~~

~~mv tempFile authorized_keys~~

The commands below assume that your shell is <code>csh</code>. Since the scripts to build and run GEOS-5 tend to be written in the same, you shouldn't bother trying to import too much into an alternative shell. If you prefer a different shell, it is easiest just to open a <code>csh</code> process to build the model and your experiment.

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== Running GEOS-5 ==

~~Setting~~ up to run:

First of all, to run jobs on the cluster you will need to set up passwordless <code>ssh</code> (which operates within the cluster). To do so, run the following from your '''discover''' home directory:

cd .ssh

ssh-keygen -t dsa

cat d_dsa.pub authorized_keys >> tempFile

mv tempFile authorized_keys

~~From~~ the <code>GEOSagcm/src/Applications/GEOSgcm_App</code> directory, we run:

To set the model up to run, in the <code>GEOSagcm/src/Applications/GEOSgcm_App</code> directory we run:

gcm_setup

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 == Checking Out and Compiling GEOS-5 ==
-The following assumes that you know your way around Unix, have successfully logged into your NCCS account (presumably on the '''discover''' cluster) and have an account on '''sourcemotel'''.  Furthermore, to run jobs on the cluster you will need to set up passwordless <code>ssh</code> (which operates within the cluster).  To do so, run the following from your '''discover''' home directory:
+The following assumes that you know your way around Unix, have successfully logged into your NCCS account (presumably on the '''discover''' cluster) and have an account on '''sourcemotel'''.
- cd .ssh
- ssh-keygen -t dsa
- cat d_dsa.pub authorized_keys >> tempFile
- mv tempFile authorized_keys
 The commands below assume that your shell is <code>csh</code>.  Since the scripts to build and run GEOS-5  tend to be written in the same, you shouldn't bother trying to import too much into an alternative shell.  If you prefer a different shell, it is easiest just to open a <code>csh</code> process to build the model and your experiment.
@@ Line 44: / Line 38: @@
 == Running GEOS-5 ==
-Setting up to run:
+First of all, to run jobs on the cluster you will need to set up passwordless <code>ssh</code> (which operates within the cluster).  To do so, run the following from your '''discover''' home directory:
+ cd .ssh
+ ssh-keygen -t dsa
+ cat d_dsa.pub authorized_keys >> tempFile
+ mv tempFile authorized_keys
-From the  <code>GEOSagcm/src/Applications/GEOSgcm_App</code> directory, we run:
+To set the model up to run, in the  <code>GEOSagcm/src/Applications/GEOSgcm_App</code> directory we run:
   gcm_setup