GEOS-5 Quick Start: Difference between revisions

Line 68:

The script you submit, <code>gcm_run.j</code>, is in ''HOMEDIR''. It should be ready to go as is, though you may eventually want to tune JOB_SGMT (the number of days between saving restarts, called segments) and NUM_SGMT (the number of segments attempted in a job) to maximize your run time. END_DATE can be changed to your end date, or just left as is. Commenting out the <code>qsub gcm_run.j</code> at the end of the script will stop it, too. Those and the PBS (batch system) parameters at the beginning are all that you will usually want to change in the script.

Submit the job with <code>qsub gcm_run.j</code>. You can keep track of it with qstat or <code>qstat | grep ''USERID''</code>, or stdout with <code>tail -f /discovery/pbs_spool/JOBID.OU</code>, JOBID being returned by qsub and displayed with qstat. Jobs can be killed with <code>qdel JOBID</code>. The stdout and stderr will be delivered as files to ''HOMEDIR'' at the end of a job.

Submit the job with <code>qsub gcm_run.j</code>. You can keep track of it with qstat or <code>qstat | grep ''USERID''</code>, or stdout with <code>tail -f /discovery/pbs_spool/''JOBID''.OU</code>, ''JOBID'' being returned by qsub and displayed with qstat. Jobs can be killed with <code>qdel ''JOBID''</code>. The stdout and stderr will be delivered as files to ''HOMEDIR'' at the end of a job.

== Output and Plots ==

@@ Line 68: / Line 68: @@
 The script you submit, <code>gcm_run.j</code>, is in ''HOMEDIR''.  It should be ready to go as is, though you may eventually want to tune JOB_SGMT (the number of days between saving restarts, called segments) and NUM_SGMT (the number of segments attempted in a job) to maximize your run time.  END_DATE can be changed to your end date, or just left as is.  Commenting out the <code>qsub gcm_run.j</code> at the end of the script will stop it, too.  Those and the PBS (batch system) parameters at the beginning are all that you will usually want to change in the script.
-Submit the job with <code>qsub gcm_run.j</code>.  You can keep track of it with qstat or <code>qstat | grep ''USERID''</code>, or stdout with <code>tail -f /discovery/pbs_spool/JOBID.OU</code>, JOBID being returned by qsub and displayed with qstat.  Jobs can be killed with <code>qdel JOBID</code>.  The stdout and stderr will be delivered as files to ''HOMEDIR'' at the end of a job.
+Submit the job with <code>qsub gcm_run.j</code>.  You can keep track of it with qstat or <code>qstat | grep ''USERID''</code>, or stdout with <code>tail -f /discovery/pbs_spool/''JOBID''.OU</code>, ''JOBID'' being returned by qsub and displayed with qstat.  Jobs can be killed with <code>qdel ''JOBID''</code>.  The stdout and stderr will be delivered as files to ''HOMEDIR'' at the end of a job.
 == Output and Plots ==