Heracles 4.3 Quick Start: Difference between revisions
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where ''USERID'' is, of course, your repository username, which should be the same as your NASA and NCCS username. Then, issue the command: | where ''USERID'' is, of course, your repository username, which should be the same as your NASA and NCCS username. Then, issue the command: | ||
cvs co -r Heracles- | cvs co -r Heracles-4_3 GEOSagcm | ||
This should check out the latest stable version of the model from the repository and create a directory called <code>GEOSagcm</code>. | This should check out the latest stable version of the model from the repository and create a directory called <code>GEOSagcm</code>. | ||
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Spaces are ok here. It will then ask for the source code version tag to associate with the model -- you should hit enter for the default: | Spaces are ok here. It will then ask for the source code version tag to associate with the model -- you should hit enter for the default: | ||
Enter an Experiment Source Tag for History (Default: Heracles- | Enter an Experiment Source Tag for History (Default: Heracles-4_3): | ||
Hit enter for the default to the next question: | Hit enter for the default to the next question: | ||
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The <code>umask 022</code> is not strictly necessary, but it will make the various files readable to others, which will facilitate data sharing and user support. Your home directory <code>~''USERID''</code> is also inaccessible to others by default; running <code>chmod 755 ~</code> is helpful. | The <code>umask 022</code> is not strictly necessary, but it will make the various files readable to others, which will facilitate data sharing and user support. Your home directory <code>~''USERID''</code> is also inaccessible to others by default; running <code>chmod 755 ~</code> is helpful. | ||
Copy the restart (initial condition) files and associated <code>cap_restart</code> into ''EXPDIR''. You can get an arbitrary set of restarts by copying the contents of the directory <code>/ | Copy the restart (initial condition) files and associated <code>cap_restart</code> into ''EXPDIR''. You can get an arbitrary set of restarts by copying the contents of the directory <code>/discover/nobackup/mathomp4/Restarts-H10/nc4/Reynolds/c48</code>, containing 2-degree cubed sphere restarts from April 14, 2000, and their corresponding <code>cap_restart</code>. | ||
The script you submit, <code>gcm_run.j</code>, is in ''HOMEDIR''. It should be ready to go as is. The parameter END_DATE in <code>CAP.rc</code> can be set to the date you want the run to stop. Submit the job with <code>sbatch gcm_run.j</code>. You can keep track of it with <code> | The script you submit, <code>gcm_run.j</code>, is in ''HOMEDIR''. It should be ready to go as is. The parameter END_DATE in <code>CAP.rc</code> can be set to the date you want the run to stop. Submit the job with <code>sbatch gcm_run.j</code>. You can keep track of it with <code>squeue</code> or <code>squeue -u ''USERID''</code>, or follow stdout with <code>tail -f ''EXPDIR''/slurm-''JOBID''.out</code>, ''JOBID'' being returned by <code>sbatch</code> and displayed with <code>squeue</code>. Jobs can be killed with <code>scancel ''JOBID''</code>. | ||
== Output and Plots == | == Output and Plots == | ||
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'''Back to [[GEOS-5 Documentation for Heracles 4.3]]''' | '''Back to [[GEOS-5 Documentation for Heracles 4.3]]''' | ||
Contact | Contact Matt Thompson at GMAO with questions and comments | ||