Updating a Baselibs Component: Difference between revisions

m Importing NCO 4.2.3: Cleanup newlines
 
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== Process of Importing A New Component to Baselibs ==
== Process of Updating A New Component to Baselibs ==


This example document will detail the process that was used importing NCO 4.2.3 into GMAO Baselibs.
This example document will detail the process that was used updating netCDF 4.3.2 into GMAO Baselibs.


=== Set up the new tag ===
=== Set up the new tag ===


In this case, we were adding NCO 4.2.3 to GMAO-Baselibs-3_3_0. So, the "internal" tag we went to was 3_3_1. In a temporary directory (say, ImportCheckout) you checkout Baselibs and tag relative so you know where you started from. You also make sure the tag you're making doesn't exist:
In this case, we were updating netCDF-C 4.3.2 to GMAO-Baselibs-4_0_5. So, the "internal" tag we went to was 4_0_6. In a temporary directory (say, NewBaselibs) you checkout Baselibs and tag relative so you know where you started from. You also make sure the tag you're making doesn't exist:


   $ cd /gpfsm/dswdev/mathomp4/Baselibs/ImportCheckout
   $ cd /discover/swdev/mathomp4/Baselibs/NewBaselibs
   $ bcvs co Baselibs
   $ bcvs co -kk Baselibs
   $ cd Baselibs/src
   $ cd Baselibs/src
   $ bcvs tag -r GMAO-Baselibs-3_3_0 Internal-3_3_1-before-NCO-4_2_3
   $ bcvs tag -r GMAO-Baselibs-4_0_5 Internal-4_0_6-before-netCDF-4_3_2-NCO-4_4_4-cURL-7_37_0
   $ bcvs tag -d Internal-3_3_1
   $ bcvs tag -d Internal-4_0_6


=== Importing NCO 4.2.3 ===
=== Unpack the new library ===


4. Move to /gpfsm/dswdev/mathomp4/Baselibs/NewImports
First, move to a directory that can contain your "new import",


   $ cd /gpfsm/dswdev/mathomp4/Baselibs/NewImports
   $ cd /discover/swdev/mathomp4/Baselibs/NewImports


a. Untar nco-4.2.3.tar.gz (from http://nco.sourceforge.net/#Source)
untar the package,


   $ tar xzf nco-4.2.3.tar.gz
   $ tar xzf netcdf-c-4.3.2.tar.gz


b. Move into netcdf directory:
and move into the new directory directory:


   $ cd nco-4.2.3/
   $ cd netcdf-c-4.3.2


c. Test import netcdf package
=== Import the new package ===


  $ bcvs -nq import -kk -m 'MAT: import NCO 4.2.3 retrieved 2012-NOV-13 from http://nco.sourceforge.net/#Source' Baselibs/src/nco NCO release-4_2_3
First, do a dry-run import of the package (note the <tt>-nq</tt>):


d. Really import the package 
  $ bcvs -nq import -kk -m "MAT: Import netCDF-C 4.3.2 retrieved 2014-JUN-10 from https://github.com/Unidata/netcdf-c/releases/tag/v4.3.2" Baselibs/src/netcdf Unidata release-4_3_2


  $ bcvs import -kk -m 'MAT: import NCO 4.2.3 retrieved 2012-NOV-13 from http://nco.sourceforge.net/#Source' Baselibs/src/nco NCO release-4_2_3
If everything looks okay, then actually import the package:


      39 conflicts created by this import.
  $ bcvs -q import -kk -m "MAT: Import netCDF-C 4.3.2 retrieved 2014-JUN-10 from https://github.com/Unidata/netcdf-c/releases/tag/v4.3.2" Baselibs/src/netcdf Unidata release-4_3_2
      Use the following command to help the merge:
 
  <snip>
 
  N Baselibs/src/netcdf/cmake/modules/FindXDR.cmake
  N Baselibs/src/netcdf/cmake/modules/windows/FindHDF5.cmake
 
  205 conflicts created by this import.
  Use the following command to help the merge:
  cvs -d :ext:mathomp4@progressdirect:/cvsroot/baselibs checkout -j<prev_rel_tag> -jrelease-4_3_2 Baselibs/src/netcdf
 
Note that this command provides helpful information on how to merge this package. You'll want to make a note of the previous release tag. The best way to find this out is via tkcvs, in my opinion.
 
=== Merging the new package into the tree ===


        cvs -d :ext:mathomp4@progressdirect:/cvsroot/baselibs checkout -j<prev_rel_tag> -jrelease-4_2_3 Baselibs/src/nco
Go back to your new Baselibs tree:


e. Check out model anew
  $ cd /discover/swdev/mathomp4/Baselibs/NewBaselibs


  $ cd /discover/swdev/mathomp4/Baselibs
Then, checkout/update to new release:
  $ mkdir NewBaselibs
  $ cd NewBaselibs
  $ bcvs co -kk Baselibs/src
      <snip checkout>
  $ bcvs -q checkout -kk Baselibs/src/nco


f. Update to new release
  $ bcvs -nq checkout -jrelease-4_2_1_1 -jrelease-4_3_2 Baselibs/src/netcdf


  $ bcvs -nq update -kk -jrel-4_0_3-20100627 -jrelease-4_2_3 Baselibs/src/nco
and remove -n and run again once satisfied.


  (remove -nq and run again once satisfied)
Move into the new package directory:


g. Move into nco
  $ cd Baselibs/src/netcdf


  $ cd Baselibs/src/nco
and check for conflicts:


h. Check for conflicts
<nowiki>$ bcvs -nq upd -kk | grep -r '^[C]'
C COPYRIGHT
C INSTALL
C Makefile.am
C Makefile.in
C aclocal.m4
C config.h.in
C configure
C configure.ac
C nc-config.in
C examples/Makefile.am
C examples/Makefile.in
C examples/C/Makefile.in
C examples/CDL/Makefile.in
C libsrc/Makefile.am
C libsrc/Makefile.in
C libsrc/ncx.c
C libsrc/ncx.m4
C libsrc/posixio.c
C libsrc/v1hpg.c
C libsrc4/Makefile.am
C libsrc4/Makefile.in
C libsrc4/nc4file.c
C libsrc4/nc4hdf.c
C libsrc4/nc4internal.c
C libsrc4/nc4var.c
C man4/Makefile.am
C man4/Makefile.in
C nc_test/Makefile.am
C nc_test/Makefile.in
C nc_test/large_files.c
C nc_test4/Makefile.am
C nc_test4/Makefile.in
C ncdap_test/Makefile.am
C ncdap_test/Makefile.in
C ncdap_test/test_cvt.c
C ncdap_test/test_varm3.c
C ncdap_test/tst_ncdap3.sh
C ncdap_test/tst_ncdap_shared.sh
C ncdap_test/tst_remote.sh
C ncdap_test/expected3/123.nc.dmp
C ncdap_test/expected3/123bears.nc.dmp
C ncdap_test/expected3/1990-S1700101.HDF.WVC_Lat.dmp
C ncdap_test/expected3/Makefile.in
C ncdap_test/expected3/bears.nc.dmp
C ncdap_test/expected3/data.nc.dmp
C ncdap_test/expected3/fnoc1.nc.dmp
C ncdap_test/expected3/in.nc.dmp
C ncdap_test/expected3/in1.nc.dmp
C ncdap_test/expected3/in_2.nc.dmp
C ncdap_test/expected3/in_no_three_double_dmn.nc.dmp
C ncdap_test/expected3/in_v.nc.dmp
C ncdap_test/expected3/synth1.dmp
C ncdap_test/expected3/test.PointFile.dmp
C ncdap_test/expected3/test.dfr1.dmp
C ncdap_test/expected3/test.dfr2.dmp
C ncdap_test/expected3/test.dfr3.dmp
C ncdap_test/expected3/test.nc.dmp
C ncdap_test/expected3/text.nc.dmp
C ncdap_test/expected4/1990-S1700101.HDF.WVC_Lat.dmp
C ncdap_test/expected4/Makefile.in
C ncdap_test/expected4/test.PointFile.dmp
C ncdap_test/expected4/test.dfr1.dmp
C ncdap_test/expected4/test.dfr2.dmp
C ncdap_test/expected4/test.dfr3.dmp
C ncdap_test/expected4/test.sds6.dmp
C ncdap_test/expected4/test.sds7.dmp
C ncdap_test/expectremote3/Makefile.am
C ncdap_test/expectremote3/Makefile.in
C ncdap_test/expectremote4/Makefile.in
C ncdap_test/testdata3/Makefile.in
C ncdump/Makefile.am
C ncdump/Makefile.in
C ncdump/dumplib.c
C ncdump/dumplib.h
C ncdump/nccopy.1
C ncdump/nccopy.c
C ncdump/ncdump.c
C ncdump/ncdump.h
C ncdump/nciter.c
C ncdump/nciter.h
C ncdump/tst_nccopy4.sh
C ncdump/tst_ncgen4_shared.sh
C ncdump/tst_netcdf4.sh
C ncdump/tst_netcdf4_4.sh
C ncdump/vardata.c
C ncdump/vardata.h
C ncdump/cdl4/Makefile.am
C ncdump/cdl4/Makefile.in
C ncdump/expected4/Makefile.am
C ncdump/expected4/Makefile.in
C ncgen/ConvertUTF.c
C ncgen/Makefile.am
C ncgen/Makefile.in
C ncgen/bytebuffer.c
C ncgen/cdata.c
C ncgen/data.h
C ncgen/debug.h
C ncgen/escapes.c
C ncgen/f77data.c
C ncgen/genbin.c
C ncgen/genc.c
C ncgen/genchar.c
C ncgen/genf77.c
C ncgen/genj.c
C ncgen/genlib.h
C ncgen/getfill.c
C ncgen/list.c
C ncgen/main.c
C ncgen/ncgen.l
C ncgen/ncgen.y
C ncgen/ncgentab.c
C ncgen/ncgenyy.c
C ncgen/odom.c
C ncgen/semantics.c
C ncgen/util.c
C ncgen3/Makefile.am
C ncgen3/Makefile.in
C nctest/Makefile.am
C nctest/Makefile.in
C nctest/driver.c</nowiki>


  $ bcvs -nq upd -kk | grep -r '^[C|M]'TmpBaselibs
 
  cvs update: New directory `autom4te.cache' -- ignored
  cvs update: New directory `debian' -- ignored
  cvs update: New directory `src/nco++/.deps' -- ignored
  M doc/ANNOUNCE
  M doc/ChangeLog
  M doc/MANIFEST
  M doc/Makefile.in
  M doc/README
  M doc/TODO
  M doc/VERSION
  M doc/debian.txt
  M doc/i18n.txt
  M doc/index.shtml
  M doc/man_end.txt
  M doc/nco.dvi
  M doc/nco.html
  M doc/nco.info
  M doc/nco.pdf
  M doc/nco.ps
  M doc/nco.texi
  M doc/nco.txt
  M doc/nco.xml
  M doc/nco_news.shtml
  M doc/nco_src_frg.txt
  M doc/opendap.sh
  M man/Makefile.in
  M man/ncap.1
  M man/ncap2.1
  M man/ncatted.1
  M man/ncbo.1
  M man/ncdiff.1
  M man/ncea.1
  M man/ncecat.1
  M man/ncflint.1
  M man/ncks.1
  M man/nco.1
  M man/ncpdq.1
  M man/ncra.1
  M man/ncrcat.1
  M man/ncrename.1
  M man/ncwa.1


i. Fix conflicts
Note in this case that many conflicts were found. If there were conflicts, you should resolve them. When in doubt, I suggest always using '''only''' what the new package contained. The only exceptions might be in Makefiles or other files that might have been edited by Denis or other maintainers to get it to build with the other Baselibs. But, if at all possible, go with the stock library.


  No conflicts found.
Once all is good, commit the changes:


j. Commit changes
  $ bcvs commit -m "MAT: merge new netCDF-C 4.3.2 import, many conflicts resolved"


  $ bcvs commit -m "MAT: merge new NCO release 4.2.3, no conflicts found"
=== Add additional packages ===


5. Tag new release at src level
Repeat the above steps for any other packages you want to update as well.


  $ cd ..
=== Tagging your new release ===
  $ bcvs tag -r GMAO-Baselibs-3_3_0 Internal-3_3_1


6. UNTAG nco and retag the new vendor release
To make your new tag, first do a relative tag at the <tt>src/</tt> level:


   $ cd nco/
   $ cd ..
   $ bcvs tag -d Internal-3_3_1
   $ bcvs tag -r GMAO-Baselibs-4_0_5 Internal-4_0_6
  $ bcvs tag -r release-4_2_3 Internal-3_3_1


7. Edit Changelog and VERSION and commit
Then, for safety's sake, '''untag''' the new library and retag the against the new vendor release tag:


8. Push tag on new files
  $ cd netcdf/
  $ bcvs tag -d Internal-4_0_6
  $ bcvs tag -r release-4_3_2 Internal-4_0_6


  $ bcvs tag -F Internal-3_3_1 ChangeLog INSTALL VERSION
Next, edit the usual metafiles (<tt>Changelog</tt>, <tt>CONTENTS</tt>, and <tt>VERSION</tt>) as well as any needed make system changes and commit those on the HEAD. Then, push your new tag on those files:


11. Checkout new tag and build
  $ bcvs tag -F Internal-4_0_6 ChangeLog CONTENTS VERSION


  a. Try doing a cvscmp to the "before" tag. Make sure the difference
=== Verify new tag ===
      looks okay


12. If all works, delete the "before" tag
The final step is to checkout the new tag and build the Baselibs per usual. My first step is to usually do a <tt>cvscmp</tt> against the old tag to make sure everything looks sane. I then like to do a <tt>diff -r</tt> between the updated library and the stock package that was downloaded from the web. Hopefully, all is well.


13. If all *really* works, rename Internal-3_3_1 to GMAO-Baselibs-3_3_1
If everything works, you can then delete your "before" tag and if all '''really''' works, rename the <tt>Internal</tt> tag with an official <tt>GMAO-Baselibs</tt> tag.


[[Category:Baselibs|Updating]]
[[Category:Baselibs|Updating]]
[[Category:SI Team]]