Running ADAS: Difference between revisions
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==ADAS | ==ADAS run== | ||
===Build model=== | ===Build model=== | ||
First, choose a model tag to build. For this example, we choose GEOSadas-5_9_1_p7. | First, choose a model tag to build. For this example, we choose GEOSadas-5_9_1_p7. | ||
$ cvs co -P -r GEOSadas-5_9_1_p7 -d | $ cvs co -P -r GEOSadas-5_9_1_p7 -d g591p8 GEOSadas-5_9 | ||
Not the module name <tt>GEOSadas-5_9</tt>. Unlike AGCM, all ADAS tags have a corresponding module. | Not the module name <tt>GEOSadas-5_9</tt>. Unlike AGCM, all ADAS tags have a corresponding module. | ||
$ cd | $ cd g591p8/src | ||
$ ./parallel_build.csh | $ ./parallel_build.csh | ||
===Setup experiment (Run <tt>fvsetup</tt>)=== | ===Setup experiment (Run <tt>fvsetup</tt>)=== | ||
Run <tt>fvsetup</tt> from the bin directory (<tt> | Run <tt>fvsetup</tt> from the bin directory (<tt>g591p8/Linux/bin</tt>) with the following options (default value chosen for ones not mentioned): | ||
[we choose the default value for the initial conditions (FVICS) as well] | [we choose the default value for the initial conditions (FVICS) as well] | ||
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EXPID? [u000_C180] | EXPID? [u000_C180] | ||
> | > g591p8 | ||
OBSERVING SYSTEM CLASSES? | OBSERVING SYSTEM CLASSES? | ||
> " | > "ncep_prep_bufr" | ||
<!-- | <!-- | ||
> "ncep_1bamua_bufr,ncep_1bamub_bufr,ncep_1bhrs2_bufr,ncep_1bhrs3_bufr, | > "ncep_1bamua_bufr,ncep_1bamub_bufr,ncep_1bhrs2_bufr,ncep_1bhrs3_bufr, | ||
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aura_omi_bufr,ncep_satwnd_bufr,ncep_atms_bufr,ncep_sevcsr_bufr" | aura_omi_bufr,ncep_satwnd_bufr,ncep_atms_bufr,ncep_sevcsr_bufr" | ||
--> | --> | ||
Do Aerosol Analysis (y/n)? [y] | |||
> n | |||
A pdf of | One can, of course, turn on Aerosol Analysis and AOD assimilation here. | ||
A pdf of an example <tt>fvsetup</tt> session is provided here: [[Media:Fvsetup_session.pdf|fvsetup_session]]. | |||
====FVHOME==== | ====FVHOME==== | ||
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<tt>$FVHOME/.FVROOT</tt> gives the location of the installation <tt>bin</tt> directory. | <tt>$FVHOME/.FVROOT</tt> gives the location of the installation <tt>bin</tt> directory. | ||
Some of these directories are stored in the archive. After completing the experiment, look in <tt>$ARCHIVE/ | Some of these directories (<tt>ana/</tt>, <tt>chem/</tt>, <tt>diag/</tt>, <tt>etc/</tt>, <tt>obs/</tt>, <tt>rs/</tt>) are stored in the archive. After completing the experiment, look in <tt>$ARCHIVE/g591p8</tt> (where <tt>g591p8</tt> is the experiment ID). | ||
====Run directory==== | ====Run directory==== | ||
$ cd $FVHOME/run | $ cd $FVHOME/run | ||
<tt>g5das.j</tt> is the job submission script. The number of cpus etc. can be changed here (if they haven't already been changed during setup). Also, if you want to run a single cycle of <tt>GSIsa.x</tt> & <tt>GEOSgcm.x</tt> add <tt>exit</tt> right before 'PART IV'. | |||
<!-- | |||
To simulate the OPS run d591_fpit, we make a few changes: | To simulate the OPS run d591_fpit, we make a few changes: | ||
# NX, NY in AGCM.rc.tmpl and AGCM.BOOTSTRAP.rc.tmpl have the same values (8, 48) as in the OPS run | # NX, NY in AGCM.rc.tmpl and AGCM.BOOTSTRAP.rc.tmpl have the same values (8, 48) as in the OPS run | ||
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## <tt>setenv NCPUS_GSI 216</tt> | ## <tt>setenv NCPUS_GSI 216</tt> | ||
## '''One cycle''': To run one segment each of GSIsa.x and GEOSgcm.x add '<tt>exit</tt>' before 'PART IV' | ## '''One cycle''': To run one segment each of GSIsa.x and GEOSgcm.x add '<tt>exit</tt>' before 'PART IV' | ||
--> | |||
===Data Assimilation | ===Data Assimilation=== | ||
$ cd $FVHOME/run | $ cd $FVHOME/run | ||
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<tt>g5das</tt> creates a scratch directory <tt>$NOBACKUP/fvwork.xxxx</tt> and runs the experiment there. After the initial setup, <tt>GSIsa.x</tt> is run with output written to <tt>ana.log</tt> followed by <tt>GEOSgcm.x</tt> which writes its output to <tt>stdout</tt> and <tt>fvpsas.log</tt>. | <tt>g5das</tt> creates a scratch directory <tt>$NOBACKUP/fvwork.xxxx</tt> and runs the experiment there. After the initial setup, <tt>GSIsa.x</tt> is run with output written to <tt>ana.log</tt> followed by <tt>GEOSgcm.x</tt> which writes its output to <tt>stdout</tt> and <tt>fvpsas.log</tt>. | ||
===Forecast=== | |||
==Simulating OPS run== | |||
<!--EVERYTHING BELOW IS COMMENTED OUT | <!--EVERYTHING BELOW IS COMMENTED OUT | ||
==Simulating DAS forecast run== | ==Simulating DAS forecast run== | ||
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--> | --> | ||
[[Category:SI Team]] | [[Category:SI Team]] | ||
[[Category:Running the Model]] | [[Category:Running the Model]] | ||
Latest revision as of 09:38, 29 March 2013
ADAS run
Build model
First, choose a model tag to build. For this example, we choose GEOSadas-5_9_1_p7.
$ cvs co -P -r GEOSadas-5_9_1_p7 -d g591p8 GEOSadas-5_9
Not the module name GEOSadas-5_9. Unlike AGCM, all ADAS tags have a corresponding module.
$ cd g591p8/src $ ./parallel_build.csh
Setup experiment (Run fvsetup)
Run fvsetup from the bin directory (g591p8/Linux/bin) with the following options (default value chosen for ones not mentioned): [we choose the default value for the initial conditions (FVICS) as well]
AGCM Resolution? [b72] > C180 OGCM Resolution? [c34] > f34 EXPID? [u000_C180] > g591p8 OBSERVING SYSTEM CLASSES? > "ncep_prep_bufr" Do Aerosol Analysis (y/n)? [y] > n
One can, of course, turn on Aerosol Analysis and AOD assimilation here.
A pdf of an example fvsetup session is provided here: fvsetup_session.
FVHOME
FVHOME is the home directory for fvDAS experiment. Resource files, restarts and system output will be stored under this directory. Usually it contains subdiretories:
ana/ first guess/analysis output anasa/ job script to run stand-alone analysis daotovs/ daotovs field output diag/ diagnostic field output etc/ listings and other odds & ends fcst/ forecast run directory fvInput/ process required inputs obs/ post-analysis ODS files prog/ prognostic field output recycle/ latest restart files rs/ restart files run/ resource files
$FVHOME/.FVROOT gives the location of the installation bin directory.
Some of these directories (ana/, chem/, diag/, etc/, obs/, rs/) are stored in the archive. After completing the experiment, look in $ARCHIVE/g591p8 (where g591p8 is the experiment ID).
Run directory
$ cd $FVHOME/run
g5das.j is the job submission script. The number of cpus etc. can be changed here (if they haven't already been changed during setup). Also, if you want to run a single cycle of GSIsa.x & GEOSgcm.x add exit right before 'PART IV'.
Data Assimilation
$ cd $FVHOME/run $ qsub g5das.j
g5das creates a scratch directory $NOBACKUP/fvwork.xxxx and runs the experiment there. After the initial setup, GSIsa.x is run with output written to ana.log followed by GEOSgcm.x which writes its output to stdout and fvpsas.log.