#!/usr/local/bin/bash
# +-======-+ 
#  Copyright (c) 2003-2007 United States Government as represented by 
#  the Admistrator of the National Aeronautics and Space Administration.  
#  All Rights Reserved.
#  
#  THIS OPEN  SOURCE  AGREEMENT  ("AGREEMENT") DEFINES  THE  RIGHTS  OF USE,
#  REPRODUCTION,  DISTRIBUTION,  MODIFICATION AND REDISTRIBUTION OF CERTAIN 
#  COMPUTER SOFTWARE ORIGINALLY RELEASED BY THE UNITED STATES GOVERNMENT AS 
#  REPRESENTED BY THE GOVERNMENT AGENCY LISTED BELOW ("GOVERNMENT AGENCY").  
#  THE UNITED STATES GOVERNMENT, AS REPRESENTED BY GOVERNMENT AGENCY, IS AN 
#  INTENDED  THIRD-PARTY  BENEFICIARY  OF  ALL  SUBSEQUENT DISTRIBUTIONS OR 
#  REDISTRIBUTIONS  OF THE  SUBJECT  SOFTWARE.  ANYONE WHO USES, REPRODUCES, 
#  DISTRIBUTES, MODIFIES  OR REDISTRIBUTES THE SUBJECT SOFTWARE, AS DEFINED 
#  HEREIN, OR ANY PART THEREOF,  IS,  BY THAT ACTION, ACCEPTING IN FULL THE 
#  RESPONSIBILITIES AND OBLIGATIONS CONTAINED IN THIS AGREEMENT.
#  
#  Government Agency: National Aeronautics and Space Administration
#  Government Agency Original Software Designation: GSC-15354-1
#  Government Agency Original Software Title:  GEOS-5 GCM Modeling Software
#  User Registration Requested.  Please Visit http://opensource.gsfc.nasa.gov
#  Government Agency Point of Contact for Original Software:  
#  			Dale Hithon, SRA Assistant, (301) 286-2691
#  
# +-======-+ 

#ESMADIR=/discover/nobackup/aeichman/Ganymed-1_0_UNSTABLE
# (for example)

if [ -z $ESMADIR ] 
then
   echo "ERROR: you need to set environment variable ESMADIR"
   exit
fi

ln -s $ESMADIR/Linux/bin/GEOSgcm.x .

# see geos5 wiki for information about these experiments

if [ $# -ge 1 ] 
then
   CASEDIR=$1
fi

echo $CASEDIR

# Uncomment the line with the case you want to set up

#CASEDIR="arm_97jul"
#CASEDIR="merra_arm97jul"
#CASEDIR="arm_kwjx"
#CASEDIR="merra_kwjx"
#CASEDIR="COARE"
#CASEDIR="merra_coare"
#CASEDIR="TRMM_LBA"
#CASEDIR="merra_trmm"
#CASEDIR="arm_scsmex"
#CASEDIR="merra_arm_scmx"
#CASEDIR="merra_armsgp"
#CASEDIR="scm_cfmip-p6"
#CASEDIR="scm_cfmip-p11"
#CASEDIR="scm_cfmip-p12"
#CASEDIR="scm_cfmip-s6"
#CASEDIR="scm_cfmip-s11"
#CASEDIR="scm_cfmip-s12"
#CASEDIR="scm_cfmip2-p6"
#CASEDIR="scm_cfmip2-p11"
#CASEDIR="scm_cfmip2-p12"
#CASEDIR="scm_cfmip2-s6"
#CASEDIR="scm_cfmip2-s11"
#CASEDIR="scm_cfmip2-s12"
#CASEDIR="armtwp_ice"
#CASEDIR="merra_twp"
#CASEDIR="merra_namma"
#CASEDIR="merra_namecore"
#CASEDIR="merra_nameaznm"
#CASEDIR="e572p1_discaq"


if [ -z $CASEDIR ] 
then
   echo "ERROR: you need to set CASEDIR"
   exit
fi



case $CASEDIR in

 "arm_97jul") DATFILE="arm_97jul.dat";;
 "merra_arm97jul") DATFILE="merra_arm97jul.dat";;
 "arm_kwjx") DATFILE="arm_kwjx.dat";;
 "merra_kwjx") DATFILE="merra_kwjx.dat";;
 "merra_coare") DATFILE="merra_coare.dat";;
 "COARE") DATFILE="TOGA_COARE.dat";;
 "TRMM_LBA") DATFILE="TRMM_LBA.dat";;
 "merra_trmm") DATFILE="merra_trmm.dat";;
 "arm_scsmex") DATFILE="arm_scmx.dat";;
 "merra_arm_scmx") DATFILE="merra_scmx.dat";;
 "merra_armsgp") DATFILE="merra_armsgp.dat";;
 "scm_cfmip-p6") DATFILE="cfmip_p6.bin";;
 "scm_cfmip-p11") DATFILE="cfmip_p11.bin";;
 "scm_cfmip-p12") DATFILE="cfmip_p12.bin";;
 "scm_cfmip-s6") DATFILE="cfmip_s6.bin";;
 "scm_cfmip-s11") DATFILE="cfmip_s11.bin";;
 "scm_cfmip-s12") DATFILE="cfmip_s12.bin";;
 "scm_cfmip2-p6") DATFILE="cfmip2_p6.bin";;
 "scm_cfmip2-p11") DATFILE="cfmip2_p11.bin";;
 "scm_cfmip2-p12") DATFILE="cfmip2_p12.bin";;
 "scm_cfmip2-s6") DATFILE="cfmip2_s6.bin";;
 "scm_cfmip2-s11") DATFILE="cfmip2_s11.bin";;
 "scm_cfmip2-s12") DATFILE="cfmip2_s12.bin";;
 "armtwp_ice") DATFILE="armtwp_ice.dat";;
 "merra_twp") DATFILE="merra_twp.dat";;
 "merra_namma") DATFILE="merra_namma.dat";;
 "merra_namecore") DATFILE="merra_namecore.dat";;
 "merra_nameaznm") DATFILE="merra_nameaznm.dat";;
 "e572p1_discaq") DATFILE="e572p1_discaq.dat";;

esac

SCMDIR="/discover/nobackup/aeichman/scm/scminfiles/g4.0/"

SOURCEDIR=$SCMDIR$CASEDIR

cp $SOURCEDIR/$DATFILE .
cp $SOURCEDIR/topo_dynave.data .
#cp $SOURCEDIR/datmodyn_internal_rst .
cp $SOURCEDIR/fraci.data .
#cp $SOURCEDIR/fvcore_internal_rst .
#cp $SOURCEDIR/moist_internal_rst .
cp $SOURCEDIR/SEAWIFS_KPAR_mon_clim.data .
cp $SOURCEDIR/sst.data .
cp $SOURCEDIR/sstsi.data .
cp $SOURCEDIR/tile.data .
cp $SOURCEDIR/topo_gwdvar.data .
cp $SOURCEDIR/topo_trbvar.data .
#cp $SOURCEDIR/catch_internal_rst .
cp $SOURCEDIR/lai.dat .
cp $SOURCEDIR/green.dat .
cp $SOURCEDIR/nirdf.dat .
cp $SOURCEDIR/vegdyn.data .
cp $SOURCEDIR/visdf.dat .
cp $SOURCEDIR/*rst .

mkdir -p ExtData
/bin/rm -rf ExtData/g5chem
/bin/ln -s /discover/nobackup/projects/gmao/share/dao_ops/fvInput_nc3/g5chem ExtData

cp -u $SOURCEDIR/CAP.rc .
cp $SOURCEDIR/cap_restart .
cp -u $SOURCEDIR/HISTORY.rc .

/bin/ln -sf /discover/nobackup/ltakacs/bcs/Fortuna-2_1/Shared/pchem.species.CMIP-5.1870-2097.z_91x72.nc4 species.data

cp $ESMADIR/Linux/etc/*.rc .
cp $SCMDIR/general/* .

#if ! [ -f AGCM.rc ] 
#then
  cp -u $SOURCEDIR/AGCM.rc .
#fi

chmod -fR 755 *